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Sample GSM1539344 Query DataSets for GSM1539344
Status Public on Aug 05, 2015
Title 4856076002_J
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 78
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description TLSC0703
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.523588004
ILMN_2383229 7.409637137
ILMN_1806310 7.401038378
ILMN_1779670 7.506323196
ILMN_2321282 7.564728257
ILMN_1671474 7.374500122
ILMN_1772582 7.431797147
ILMN_1653355 7.594482593
ILMN_1717783 7.373440422
ILMN_1705025 7.405401657
ILMN_2359168 7.412887296
ILMN_1731507 7.370232053
ILMN_1787689 7.452961357
ILMN_1745607 7.40587631
ILMN_1668111 7.520830249
ILMN_1735045 7.413502983
ILMN_1680754 7.474851924
ILMN_1659452 7.536727548
ILMN_1767388 7.482450392
ILMN_1755321 7.655920183

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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