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Sample GSM1539342 Query DataSets for GSM1539342
Status Public on Aug 05, 2015
Title 4856050059_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 80
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description TLSC0710
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.589392884
ILMN_2383229 7.379923268
ILMN_1806310 7.544873933
ILMN_1779670 7.359871103
ILMN_2321282 7.717490145
ILMN_1671474 7.436187545
ILMN_1772582 7.413518101
ILMN_1653355 7.572617237
ILMN_1717783 7.310194854
ILMN_1705025 7.483176498
ILMN_2359168 7.416925707
ILMN_1731507 7.448030561
ILMN_1787689 7.496620312
ILMN_1745607 7.505191221
ILMN_1668111 7.465290513
ILMN_1735045 7.428314801
ILMN_1680754 7.572960078
ILMN_1659452 7.523129889
ILMN_1767388 7.456712156
ILMN_1755321 7.648611789

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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