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Sample GSM1539339 Query DataSets for GSM1539339
Status Public on Aug 05, 2015
Title 4856050009_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 79
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description TLSC0706
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.679375206
ILMN_2383229 7.414953162
ILMN_1806310 7.428341131
ILMN_1779670 7.454371882
ILMN_2321282 7.464588283
ILMN_1671474 7.394277335
ILMN_1772582 7.378812612
ILMN_1653355 7.583850773
ILMN_1717783 7.432897255
ILMN_1705025 7.473888447
ILMN_2359168 7.425441891
ILMN_1731507 7.43627931
ILMN_1787689 7.522465457
ILMN_1745607 7.369743837
ILMN_1668111 7.368030754
ILMN_1735045 7.432304138
ILMN_1680754 7.488367923
ILMN_1659452 7.417239823
ILMN_1767388 7.618176912
ILMN_1755321 7.637722007

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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