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Sample GSM1539338 Query DataSets for GSM1539338
Status Public on Aug 05, 2015
Title 4856050009_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 78
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSC0015
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.678831514
ILMN_2383229 7.344773959
ILMN_1806310 7.562182467
ILMN_1779670 7.486293843
ILMN_2321282 7.595214762
ILMN_1671474 7.405537438
ILMN_1772582 7.532950688
ILMN_1653355 7.700775982
ILMN_1717783 7.415564792
ILMN_1705025 7.417037469
ILMN_2359168 7.432940997
ILMN_1731507 7.510389727
ILMN_1787689 7.610486241
ILMN_1745607 7.429809561
ILMN_1668111 7.459603497
ILMN_1735045 7.345442996
ILMN_1680754 7.610441695
ILMN_1659452 7.558881028
ILMN_1767388 7.515851315
ILMN_1755321 7.598049604

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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