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Sample GSM1539334 Query DataSets for GSM1539334
Status Public on Aug 05, 2015
Title 4856050003_L
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 79
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description TLSC0708
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.625034116
ILMN_2383229 7.463966207
ILMN_1806310 7.504521626
ILMN_1779670 7.417559356
ILMN_2321282 7.5293224
ILMN_1671474 7.371763229
ILMN_1772582 7.368168159
ILMN_1653355 7.573127
ILMN_1717783 7.571227568
ILMN_1705025 7.457876513
ILMN_2359168 7.568671873
ILMN_1731507 7.445496864
ILMN_1787689 7.533490046
ILMN_1745607 7.451680086
ILMN_1668111 7.396458052
ILMN_1735045 7.42764098
ILMN_1680754 7.42892504
ILMN_1659452 7.431109398
ILMN_1767388 7.510338749
ILMN_1755321 7.614310801

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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