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Sample GSM1539330 Query DataSets for GSM1539330
Status Public on Aug 05, 2015
Title 4856076041_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 68
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description TLSM0605
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.536317001
ILMN_2383229 7.437909974
ILMN_1806310 7.423814964
ILMN_1779670 7.4476072
ILMN_2321282 7.599841253
ILMN_1671474 7.49685604
ILMN_1772582 7.502450537
ILMN_1653355 7.674872885
ILMN_1717783 7.433438603
ILMN_1705025 7.42538841
ILMN_2359168 7.49845219
ILMN_1731507 7.363300757
ILMN_1787689 7.506891904
ILMN_1745607 7.472354521
ILMN_1668111 7.479934682
ILMN_1735045 7.523768181
ILMN_1680754 7.590633278
ILMN_1659452 7.555229021
ILMN_1767388 7.432430364
ILMN_1755321 7.771703617

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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