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Sample GSM1539324 Query DataSets for GSM1539324
Status Public on Aug 05, 2015
Title 4856076029_F
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 78
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LND0133
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.712184206
ILMN_2383229 7.416733017
ILMN_1806310 7.402809596
ILMN_1779670 7.470521205
ILMN_2321282 7.562274035
ILMN_1671474 7.458673497
ILMN_1772582 7.570064783
ILMN_1653355 7.658302408
ILMN_1717783 7.400171013
ILMN_1705025 7.443066566
ILMN_2359168 7.387481818
ILMN_1731507 7.540013706
ILMN_1787689 7.528798356
ILMN_1745607 7.391562293
ILMN_1668111 7.367851261
ILMN_1735045 7.38681669
ILMN_1680754 7.521635338
ILMN_1659452 7.454927156
ILMN_1767388 7.481354129
ILMN_1755321 7.679452753

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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