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Sample GSM1539323 Query DataSets for GSM1539323
Status Public on Aug 05, 2015
Title 4856076028_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 79
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGM0038
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.692005395
ILMN_2383229 7.552130149
ILMN_1806310 7.49734919
ILMN_1779670 7.505774843
ILMN_2321282 7.478086909
ILMN_1671474 7.395929319
ILMN_1772582 7.480322518
ILMN_1653355 7.618362612
ILMN_1717783 7.410255643
ILMN_1705025 7.355242474
ILMN_2359168 7.41348867
ILMN_1731507 7.424009186
ILMN_1787689 7.489140034
ILMN_1745607 7.471582063
ILMN_1668111 7.457888243
ILMN_1735045 7.38513633
ILMN_1680754 7.376574408
ILMN_1659452 7.548873936
ILMN_1767388 7.561156303
ILMN_1755321 7.970614811

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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