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Sample GSM1539304 Query DataSets for GSM1539304
Status Public on Aug 05, 2015
Title 4856076002_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 68
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOM0019
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.555143357
ILMN_2383229 7.567298797
ILMN_1806310 7.433742652
ILMN_1779670 7.367650234
ILMN_2321282 7.630744774
ILMN_1671474 7.478818243
ILMN_1772582 7.562152921
ILMN_1653355 7.480266401
ILMN_1717783 7.329695218
ILMN_1705025 7.395382071
ILMN_2359168 7.396644122
ILMN_1731507 7.579740893
ILMN_1787689 7.614086805
ILMN_1745607 7.54157957
ILMN_1668111 7.505795522
ILMN_1735045 7.383581051
ILMN_1680754 7.599083179
ILMN_1659452 7.448492055
ILMN_1767388 7.651011209
ILMN_1755321 7.724347383

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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