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Sample GSM1539303 Query DataSets for GSM1539303
Status Public on Aug 05, 2015
Title 4856050059_H
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 64
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOM0007
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.560242343
ILMN_2383229 7.391616453
ILMN_1806310 7.468771439
ILMN_1779670 7.452589569
ILMN_2321282 7.584186364
ILMN_1671474 7.523295883
ILMN_1772582 7.479457978
ILMN_1653355 7.584948996
ILMN_1717783 7.440103057
ILMN_1705025 7.385562776
ILMN_2359168 7.549111511
ILMN_1731507 7.45856478
ILMN_1787689 7.474989149
ILMN_1745607 7.390876383
ILMN_1668111 7.617897376
ILMN_1735045 7.417130852
ILMN_1680754 7.585993583
ILMN_1659452 7.493792672
ILMN_1767388 7.42289933
ILMN_1755321 7.755709508

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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