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Sample GSM1539295 Query DataSets for GSM1539295
Status Public on Aug 05, 2015
Title 4856050009_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 81
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOM0010
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.53435302
ILMN_2383229 7.377581113
ILMN_1806310 7.533536997
ILMN_1779670 7.445022426
ILMN_2321282 7.55952933
ILMN_1671474 7.49336783
ILMN_1772582 7.466277233
ILMN_1653355 7.598581248
ILMN_1717783 7.340157599
ILMN_1705025 7.442667736
ILMN_2359168 7.440192938
ILMN_1731507 7.33696918
ILMN_1787689 7.471066412
ILMN_1745607 7.416493713
ILMN_1668111 7.511065638
ILMN_1735045 7.433802864
ILMN_1680754 7.460879699
ILMN_1659452 7.416437129
ILMN_1767388 7.580547709
ILMN_1755321 7.697653236

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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