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Sample GSM1539291 Query DataSets for GSM1539291
Status Public on Aug 05, 2015
Title 4856050007_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Unknown
age: 72
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSM0062
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.554412435
ILMN_2383229 7.406785283
ILMN_1806310 7.377503997
ILMN_1779670 7.501687653
ILMN_2321282 7.643809174
ILMN_1671474 7.430492968
ILMN_1772582 7.435122554
ILMN_1653355 7.647007922
ILMN_1717783 7.315452823
ILMN_1705025 7.403365426
ILMN_2359168 7.39649302
ILMN_1731507 7.393344577
ILMN_1787689 7.474740865
ILMN_1745607 7.387110002
ILMN_1668111 7.535019916
ILMN_1735045 7.465464791
ILMN_1680754 7.51684466
ILMN_1659452 7.422244486
ILMN_1767388 7.46893788
ILMN_1755321 7.647555699

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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