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Sample GSM1539284 Query DataSets for GSM1539284
Status Public on Aug 05, 2015
Title 4856076030_H
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 76
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZA0001
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.569372768
ILMN_2383229 7.379649477
ILMN_1806310 7.49877456
ILMN_1779670 7.527728152
ILMN_2321282 7.442715758
ILMN_1671474 7.419318517
ILMN_1772582 7.473046695
ILMN_1653355 7.692005395
ILMN_1717783 7.382438449
ILMN_1705025 7.358301519
ILMN_2359168 7.413441148
ILMN_1731507 7.463446351
ILMN_1787689 7.51178281
ILMN_1745607 7.444581425
ILMN_1668111 7.404625189
ILMN_1735045 7.386963929
ILMN_1680754 7.477450764
ILMN_1659452 7.463791076
ILMN_1767388 7.572960078
ILMN_1755321 7.673496103

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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