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Sample GSM1539262 Query DataSets for GSM1539262
Status Public on Aug 05, 2015
Title 4856076009_F
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 84
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOA0014
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.545191589
ILMN_2383229 7.408793575
ILMN_1806310 7.45315845
ILMN_1779670 7.445593225
ILMN_2321282 7.536628659
ILMN_1671474 7.395486245
ILMN_1772582 7.433163574
ILMN_1653355 7.667451768
ILMN_1717783 7.441977185
ILMN_1705025 7.502535753
ILMN_2359168 7.41603423
ILMN_1731507 7.508377773
ILMN_1787689 7.584505666
ILMN_1745607 7.395347949
ILMN_1668111 7.388665824
ILMN_1735045 7.351721036
ILMN_1680754 7.454164349
ILMN_1659452 7.500737684
ILMN_1767388 7.41110975
ILMN_1755321 7.657471238

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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