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Sample GSM1539253 Query DataSets for GSM1539253
Status Public on Aug 05, 2015
Title 4856076002_K
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Other Caucasian
age: 76
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSA0011
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.519930773
ILMN_2383229 7.447194866
ILMN_1806310 7.462132124
ILMN_1779670 7.378439111
ILMN_2321282 7.466104501
ILMN_1671474 7.440686486
ILMN_1772582 7.423828134
ILMN_1653355 7.59439081
ILMN_1717783 7.432948998
ILMN_1705025 7.380015702
ILMN_2359168 7.527313056
ILMN_1731507 7.533766339
ILMN_1787689 7.654825268
ILMN_1745607 7.43947656
ILMN_1668111 7.472203502
ILMN_1735045 7.410227864
ILMN_1680754 7.559222691
ILMN_1659452 7.476787971
ILMN_1767388 7.52936984
ILMN_1755321 7.653261068

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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