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Sample GSM1539251 Query DataSets for GSM1539251
Status Public on Aug 05, 2015
Title 4856050059_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 80
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOA0026
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.575101517
ILMN_2383229 7.460300506
ILMN_1806310 7.779247157
ILMN_1779670 7.534908773
ILMN_2321282 7.644837275
ILMN_1671474 7.380848297
ILMN_1772582 7.436985534
ILMN_1653355 7.683376666
ILMN_1717783 7.34530048
ILMN_1705025 7.393467503
ILMN_2359168 7.508544155
ILMN_1731507 7.459968125
ILMN_1787689 7.504386634
ILMN_1745607 7.354812059
ILMN_1668111 7.340403241
ILMN_1735045 7.450738118
ILMN_1680754 7.533310769
ILMN_1659452 7.429185236
ILMN_1767388 7.542402945
ILMN_1755321 7.934841472

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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