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Sample GSM1539248 Query DataSets for GSM1539248
Status Public on Aug 05, 2015
Title 4856050058_A
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 81
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZA0026
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.644403516
ILMN_2383229 7.399667241
ILMN_1806310 7.516109414
ILMN_1779670 7.429404445
ILMN_2321282 7.567913808
ILMN_1671474 7.379586318
ILMN_1772582 7.561407611
ILMN_1653355 7.546491447
ILMN_1717783 7.443381959
ILMN_1705025 7.3493582
ILMN_2359168 7.515756751
ILMN_1731507 7.539223177
ILMN_1787689 7.608579718
ILMN_1745607 7.438132771
ILMN_1668111 7.43663087
ILMN_1735045 7.421099213
ILMN_1680754 7.636330526
ILMN_1659452 7.369523888
ILMN_1767388 7.506180478
ILMN_1755321 7.644837275

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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