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Sample GSM1539243 Query DataSets for GSM1539243
Status Public on Aug 05, 2015
Title 4856050009_C
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Other Caucasian
age: 83
gender: Male
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSA0058
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.652954712
ILMN_2383229 7.464906436
ILMN_1806310 7.496291366
ILMN_1779670 7.679375206
ILMN_2321282 7.584453721
ILMN_1671474 7.464251878
ILMN_1772582 7.492762175
ILMN_1653355 7.742052951
ILMN_1717783 7.42314966
ILMN_1705025 7.423721426
ILMN_2359168 7.375693435
ILMN_1731507 7.428899594
ILMN_1787689 7.538348801
ILMN_1745607 7.485560729
ILMN_1668111 7.402861558
ILMN_1735045 7.455622241
ILMN_1680754 7.466869462
ILMN_1659452 7.517447217
ILMN_1767388 7.501130858
ILMN_1755321 7.595342198

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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