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Sample GSM1539237 Query DataSets for GSM1539237
Status Public on Aug 05, 2015
Title 4856050003_K
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 82
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOA0008
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.635497558
ILMN_2383229 7.408300256
ILMN_1806310 7.488659369
ILMN_1779670 7.486861273
ILMN_2321282 7.756675657
ILMN_1671474 7.42868396
ILMN_1772582 7.434437228
ILMN_1653355 7.60328192
ILMN_1717783 7.406908751
ILMN_1705025 7.42482359
ILMN_2359168 7.424017687
ILMN_1731507 7.421025321
ILMN_1787689 7.562682243
ILMN_1745607 7.524363875
ILMN_1668111 7.451573871
ILMN_1735045 7.427525678
ILMN_1680754 7.470096772
ILMN_1659452 7.492780093
ILMN_1767388 7.439904889
ILMN_1755321 7.531618

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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