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Sample GSM1539235 Query DataSets for GSM1539235
Status Public on Aug 05, 2015
Title 4856076042_L
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 82
gender: Female
included in case -control study: no
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGA0019
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.932968185
ILMN_2383229 7.500131633
ILMN_1806310 7.561347402
ILMN_1779670 7.399177522
ILMN_2321282 7.502182186
ILMN_1671474 7.492235467
ILMN_1772582 7.541042662
ILMN_1653355 7.921210621
ILMN_1717783 7.357218447
ILMN_1705025 7.544226211
ILMN_2359168 7.442319102
ILMN_1731507 7.586343056
ILMN_1787689 7.590445841
ILMN_1745607 7.609069792
ILMN_1668111 7.398026761
ILMN_1735045 7.412051136
ILMN_1680754 7.583403359
ILMN_1659452 7.404383755
ILMN_1767388 7.53028815
ILMN_1755321 7.542085961

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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