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Sample GSM1539234 Query DataSets for GSM1539234
Status Public on Aug 05, 2015
Title 4856050048_E
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 75
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description TLSA0514
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.437536265
ILMN_2383229 7.3967357
ILMN_1806310 7.453464975
ILMN_1779670 7.43890593
ILMN_2321282 7.566463003
ILMN_1671474 7.472519461
ILMN_1772582 7.442435599
ILMN_1653355 7.730422581
ILMN_1717783 7.466726451
ILMN_1705025 7.409004172
ILMN_2359168 7.533063872
ILMN_1731507 7.407478082
ILMN_1787689 7.571934281
ILMN_1745607 7.334593807
ILMN_1668111 7.404437961
ILMN_1735045 7.44830217
ILMN_1680754 7.484065921
ILMN_1659452 7.517751612
ILMN_1767388 7.437394315
ILMN_1755321 7.650277251

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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