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Sample GSM1539233 Query DataSets for GSM1539233
Status Public on Aug 05, 2015
Title 4856076030_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Other Caucasian
age: 75
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSA0007
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.569799342
ILMN_2383229 7.412353056
ILMN_1806310 7.415388347
ILMN_1779670 7.484354966
ILMN_2321282 7.685577436
ILMN_1671474 7.375854398
ILMN_1772582 7.47816501
ILMN_1653355 7.552545807
ILMN_1717783 7.324230157
ILMN_1705025 7.405557165
ILMN_2359168 7.371710105
ILMN_1731507 7.473276898
ILMN_1787689 7.523792297
ILMN_1745607 7.424739879
ILMN_1668111 7.414312512
ILMN_1735045 7.410587388
ILMN_1680754 7.573835009
ILMN_1659452 7.443812552
ILMN_1767388 7.487745682
ILMN_1755321 7.552762906

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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