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Sample GSM1539231 Query DataSets for GSM1539231
Status Public on Aug 05, 2015
Title 4856076038_C
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Other Caucasian
age: 73
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSA0022
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.564080128
ILMN_2383229 7.493111855
ILMN_1806310 7.524154935
ILMN_1779670 7.497007335
ILMN_2321282 7.461490779
ILMN_1671474 7.468283517
ILMN_1772582 7.401709748
ILMN_1653355 7.609090974
ILMN_1717783 7.405102149
ILMN_1705025 7.395136708
ILMN_2359168 7.439400871
ILMN_1731507 7.541066549
ILMN_1787689 7.704670881
ILMN_1745607 7.451104498
ILMN_1668111 7.426756608
ILMN_1735045 7.399825241
ILMN_1680754 7.434310298
ILMN_1659452 7.520945698
ILMN_1767388 7.492468935
ILMN_1755321 7.744212954

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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