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Sample GSM1539230 Query DataSets for GSM1539230
Status Public on Aug 05, 2015
Title 4856076027_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Other Caucasian
age: 73
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSA0004
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.567498633
ILMN_2383229 7.543137141
ILMN_1806310 7.498613423
ILMN_1779670 7.537223444
ILMN_2321282 7.423962282
ILMN_1671474 7.394585476
ILMN_1772582 7.491696437
ILMN_1653355 7.863114483
ILMN_1717783 7.415846985
ILMN_1705025 7.42984413
ILMN_2359168 7.413345414
ILMN_1731507 7.439369805
ILMN_1787689 7.57615291
ILMN_1745607 7.401935503
ILMN_1668111 7.448475935
ILMN_1735045 7.429944901
ILMN_1680754 7.612463975
ILMN_1659452 7.506882388
ILMN_1767388 7.411982664
ILMN_1755321 7.659273025

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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