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Sample GSM1539224 Query DataSets for GSM1539224
Status Public on Aug 05, 2015
Title 4856076023_B
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Other Caucasian
age: 71
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSA0006
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.438083826
ILMN_2383229 7.377126447
ILMN_1806310 7.516304748
ILMN_1779670 7.510826722
ILMN_2321282 7.559222691
ILMN_1671474 7.45430896
ILMN_1772582 7.291181653
ILMN_1653355 7.696858881
ILMN_1717783 7.408702376
ILMN_1705025 7.441795693
ILMN_2359168 7.459587002
ILMN_1731507 7.631834129
ILMN_1787689 7.511300104
ILMN_1745607 7.360570815
ILMN_1668111 7.509407367
ILMN_1735045 7.420297481
ILMN_1680754 7.394362256
ILMN_1659452 7.492171498
ILMN_1767388 7.418108457
ILMN_1755321 7.807305121

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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