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Sample GSM1539221 Query DataSets for GSM1539221
Status Public on Aug 05, 2015
Title 4856076022_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 69
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOA0038
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.514289591
ILMN_2383229 7.394680573
ILMN_1806310 7.425124293
ILMN_1779670 7.532159245
ILMN_2321282 7.651967438
ILMN_1671474 7.428595785
ILMN_1772582 7.430733499
ILMN_1653355 7.655676042
ILMN_1717783 7.471925674
ILMN_1705025 7.365763394
ILMN_2359168 7.330412328
ILMN_1731507 7.472765897
ILMN_1787689 7.494589304
ILMN_1745607 7.446600564
ILMN_1668111 7.393948132
ILMN_1735045 7.375675766
ILMN_1680754 7.642008862
ILMN_1659452 7.496158684
ILMN_1767388 7.411033228
ILMN_1755321 7.610073649

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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