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Sample GSM1539220 Query DataSets for GSM1539220
Status Public on Aug 05, 2015
Title 4856076025_K
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 60
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOA0025
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.585387042
ILMN_2383229 7.421462441
ILMN_1806310 7.426794897
ILMN_1779670 7.504414873
ILMN_2321282 7.515361211
ILMN_1671474 7.403066246
ILMN_1772582 7.453636289
ILMN_1653355 7.730123699
ILMN_1717783 7.395888808
ILMN_1705025 7.499944432
ILMN_2359168 7.472199631
ILMN_1731507 7.48086469
ILMN_1787689 7.520107122
ILMN_1745607 7.428492842
ILMN_1668111 7.462950921
ILMN_1735045 7.446649796
ILMN_1680754 7.576188049
ILMN_1659452 7.431332041
ILMN_1767388 7.534934067
ILMN_1755321 7.719302755

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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