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Sample GSM1539196 Query DataSets for GSM1539196
Status Public on Aug 05, 2015
Title 4856076042_C
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Other Caucasian
age: 68
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSA0002
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.508216786
ILMN_2383229 7.539625431
ILMN_1806310 7.501998375
ILMN_1779670 7.497367898
ILMN_2321282 7.43007256
ILMN_1671474 7.512930982
ILMN_1772582 7.561973848
ILMN_1653355 7.738164048
ILMN_1717783 7.501255599
ILMN_1705025 7.529392859
ILMN_2359168 7.404881636
ILMN_1731507 7.491823203
ILMN_1787689 7.592071434
ILMN_1745607 7.464524488
ILMN_1668111 7.484074594
ILMN_1735045 7.379879347
ILMN_1680754 7.433490342
ILMN_1659452 7.453676676
ILMN_1767388 7.568371037
ILMN_1755321 7.500419444

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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