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Sample GSM1539193 Query DataSets for GSM1539193
Status Public on Aug 05, 2015
Title 4856076026_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 66
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOA0012
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.700251308
ILMN_2383229 7.544108577
ILMN_1806310 7.53899409
ILMN_1779670 7.403169245
ILMN_2321282 7.694558382
ILMN_1671474 7.463116342
ILMN_1772582 7.405649054
ILMN_1653355 7.710047387
ILMN_1717783 7.405091909
ILMN_1705025 7.422298724
ILMN_2359168 7.427400454
ILMN_1731507 7.381519233
ILMN_1787689 7.466726451
ILMN_1745607 7.362842563
ILMN_1668111 7.397153867
ILMN_1735045 7.333298774
ILMN_1680754 7.575850929
ILMN_1659452 7.446849176
ILMN_1767388 7.467160502
ILMN_1755321 7.719582346

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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