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Sample GSM1539187 Query DataSets for GSM1539187
Status Public on Aug 05, 2015
Title 4856050046_J
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: AD
ethnicity: Western European
age: 58
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZA0008
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.52064254
ILMN_2383229 7.529850397
ILMN_1806310 7.51856153
ILMN_1779670 7.462481364
ILMN_2321282 7.600001968
ILMN_1671474 7.446206434
ILMN_1772582 7.382122346
ILMN_1653355 7.628525642
ILMN_1717783 7.451577665
ILMN_1705025 7.403365426
ILMN_2359168 7.323590311
ILMN_1731507 7.415799855
ILMN_1787689 7.552721378
ILMN_1745607 7.526275511
ILMN_1668111 7.397039788
ILMN_1735045 7.501679241
ILMN_1680754 7.436626768
ILMN_1659452 7.466620576
ILMN_1767388 7.437941932
ILMN_1755321 7.838845115

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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