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Sample GSM1539185 Query DataSets for GSM1539185
Status Public on Aug 05, 2015
Title 4856050007_I
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Other Caucasian
age: 75
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGC0030
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.6034924
ILMN_2383229 7.485803284
ILMN_1806310 7.478511173
ILMN_1779670 7.535091899
ILMN_2321282 7.598843426
ILMN_1671474 7.430475101
ILMN_1772582 7.494355044
ILMN_1653355 7.799940467
ILMN_1717783 7.391322933
ILMN_1705025 7.475733629
ILMN_2359168 7.446535927
ILMN_1731507 7.439751779
ILMN_1787689 7.515190305
ILMN_1745607 7.33791509
ILMN_1668111 7.365438386
ILMN_1735045 7.40689797
ILMN_1680754 7.524839279
ILMN_1659452 7.597322095
ILMN_1767388 7.54200062
ILMN_1755321 7.658302408

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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