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Sample GSM1539176 Query DataSets for GSM1539176
Status Public on Aug 05, 2015
Title 4856076008_E
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 71
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LND0108
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.555701336
ILMN_2383229 7.412500608
ILMN_1806310 7.452320605
ILMN_1779670 7.470814305
ILMN_2321282 7.514860925
ILMN_1671474 7.428441679
ILMN_1772582 7.34743204
ILMN_1653355 7.522054826
ILMN_1717783 7.424567774
ILMN_1705025 7.467881558
ILMN_2359168 7.385493699
ILMN_1731507 7.37828332
ILMN_1787689 7.451589141
ILMN_1745607 7.37644521
ILMN_1668111 7.437001952
ILMN_1735045 7.460806568
ILMN_1680754 7.522465457
ILMN_1659452 7.538137879
ILMN_1767388 7.368168159
ILMN_1755321 7.737896684

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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