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Sample GSM1539162 Query DataSets for GSM1539162
Status Public on Aug 05, 2015
Title 4856076029_J
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 61
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOC0007
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.590785357
ILMN_2383229 7.378735715
ILMN_1806310 7.49305606
ILMN_1779670 7.444590223
ILMN_2321282 7.544133966
ILMN_1671474 7.425887209
ILMN_1772582 7.454252846
ILMN_1653355 7.677786831
ILMN_1717783 7.381220516
ILMN_1705025 7.482923734
ILMN_2359168 7.417662922
ILMN_1731507 7.512020563
ILMN_1787689 7.680379422
ILMN_1745607 7.4270303
ILMN_1668111 7.390064032
ILMN_1735045 7.471617118
ILMN_1680754 7.477870402
ILMN_1659452 7.473581732
ILMN_1767388 7.4501264
ILMN_1755321 7.574364266

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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