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Sample GSM1539161 Query DataSets for GSM1539161
Status Public on Aug 05, 2015
Title 4856050009_H
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 61
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOC0006
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.487101327
ILMN_2383229 7.430519104
ILMN_1806310 7.509121097
ILMN_1779670 7.488691071
ILMN_2321282 7.467262452
ILMN_1671474 7.48980433
ILMN_1772582 7.444980767
ILMN_1653355 7.653832553
ILMN_1717783 7.401785734
ILMN_1705025 7.340034661
ILMN_2359168 7.372123865
ILMN_1731507 7.382163981
ILMN_1787689 7.57071859
ILMN_1745607 7.377566301
ILMN_1668111 7.425903722
ILMN_1735045 7.520751873
ILMN_1680754 7.565665528
ILMN_1659452 7.555341916
ILMN_1767388 7.376101622
ILMN_1755321 7.579498024

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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