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Sample GSM1539156 Query DataSets for GSM1539156
Status Public on Aug 05, 2015
Title 4856076008_K
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 75
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGC0012
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.504735209
ILMN_2383229 7.496224667
ILMN_1806310 7.575383439
ILMN_1779670 7.427179431
ILMN_2321282 7.640674443
ILMN_1671474 7.369487161
ILMN_1772582 7.432813623
ILMN_1653355 7.479790839
ILMN_1717783 7.448760303
ILMN_1705025 7.435118153
ILMN_2359168 7.50207601
ILMN_1731507 7.587627465
ILMN_1787689 7.569058356
ILMN_1745607 7.375286073
ILMN_1668111 7.431711639
ILMN_1735045 7.448783785
ILMN_1680754 7.506051643
ILMN_1659452 7.455355534
ILMN_1767388 7.386214103
ILMN_1755321 7.7483933

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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