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Sample GSM1539143 Query DataSets for GSM1539143
Status Public on Aug 05, 2015
Title 4856050048_H
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 71
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LND0021
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.5481867
ILMN_2383229 7.480807545
ILMN_1806310 7.589811584
ILMN_1779670 7.444590223
ILMN_2321282 7.624096212
ILMN_1671474 7.486155838
ILMN_1772582 7.422029721
ILMN_1653355 7.621100958
ILMN_1717783 7.337735784
ILMN_1705025 7.426181805
ILMN_2359168 7.446395051
ILMN_1731507 7.42984413
ILMN_1787689 7.875324392
ILMN_1745607 7.444572722
ILMN_1668111 7.45315845
ILMN_1735045 7.515560749
ILMN_1680754 7.658052756
ILMN_1659452 7.408300256
ILMN_1767388 7.617507902
ILMN_1755321 7.80194229

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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