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Sample GSM1539140 Query DataSets for GSM1539140
Status Public on Aug 05, 2015
Title 4856050059_F
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 70
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZC0017
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.55347476
ILMN_2383229 7.397188844
ILMN_1806310 7.435383726
ILMN_1779670 7.461440541
ILMN_2321282 7.525313356
ILMN_1671474 7.434377309
ILMN_1772582 7.418126012
ILMN_1653355 7.643030423
ILMN_1717783 7.413949551
ILMN_1705025 7.406289017
ILMN_2359168 7.379283802
ILMN_1731507 7.506961823
ILMN_1787689 7.450100963
ILMN_1745607 7.41377729
ILMN_1668111 7.529661037
ILMN_1735045 7.444115682
ILMN_1680754 7.462023627
ILMN_1659452 7.481175107
ILMN_1767388 7.456661062
ILMN_1755321 7.651401228

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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