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Sample GSM1539133 Query DataSets for GSM1539133
Status Public on Aug 05, 2015
Title 4856076025_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: CTL
ethnicity: Western European
age: 68
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZC0002
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.635672835
ILMN_2383229 7.444373467
ILMN_1806310 7.530572136
ILMN_1779670 7.470312395
ILMN_2321282 7.522564378
ILMN_1671474 7.338580255
ILMN_1772582 7.548886983
ILMN_1653355 7.721986891
ILMN_1717783 7.364247699
ILMN_1705025 7.44170486
ILMN_2359168 7.387750607
ILMN_1731507 7.540530238
ILMN_1787689 7.640045525
ILMN_1745607 7.371551244
ILMN_1668111 7.347496838
ILMN_1735045 7.448269677
ILMN_1680754 7.339147317
ILMN_1659452 7.36312882
ILMN_1767388 7.44465474
ILMN_1755321 7.70509954

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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