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Sample GSM1539113 Query DataSets for GSM1539113
Status Public on Aug 05, 2015
Title 4856076008_J
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 71
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description PRGM0001
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.542249627
ILMN_2383229 7.46101677
ILMN_1806310 7.456153405
ILMN_1779670 7.497339869
ILMN_2321282 7.47671608
ILMN_1671474 7.367455239
ILMN_1772582 7.511218133
ILMN_1653355 7.654730827
ILMN_1717783 7.401071339
ILMN_1705025 7.370214584
ILMN_2359168 7.353084007
ILMN_1731507 7.518977371
ILMN_1787689 7.603783098
ILMN_1745607 7.426507843
ILMN_1668111 7.41451973
ILMN_1735045 7.400205292
ILMN_1680754 7.492612119
ILMN_1659452 7.500987869
ILMN_1767388 7.477133256
ILMN_1755321 7.686610335

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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