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Sample GSM1539108 Query DataSets for GSM1539108
Status Public on Aug 05, 2015
Title 4856050058_E
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 66
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSM0022
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.501726851
ILMN_2383229 7.313785697
ILMN_1806310 7.493643968
ILMN_1779670 7.46672277
ILMN_2321282 7.679560674
ILMN_1671474 7.378689157
ILMN_1772582 7.428389755
ILMN_1653355 7.621820947
ILMN_1717783 7.466678016
ILMN_1705025 7.367254409
ILMN_2359168 7.355192354
ILMN_1731507 7.399915716
ILMN_1787689 7.48967749
ILMN_1745607 7.414060299
ILMN_1668111 7.459248112
ILMN_1735045 7.385659782
ILMN_1680754 7.563500928
ILMN_1659452 7.486419358
ILMN_1767388 7.383509187
ILMN_1755321 7.641951803

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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