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Sample GSM1539106 Query DataSets for GSM1539106
Status Public on Aug 05, 2015
Title 4856076018_J
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 66
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOM0022
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.621796166
ILMN_2383229 7.404902278
ILMN_1806310 7.417340362
ILMN_1779670 7.517163684
ILMN_2321282 7.4195745
ILMN_1671474 7.47623365
ILMN_1772582 7.408834095
ILMN_1653355 7.68789058
ILMN_1717783 7.382742152
ILMN_1705025 7.50342702
ILMN_2359168 7.415378634
ILMN_1731507 7.493643968
ILMN_1787689 7.542196261
ILMN_1745607 7.3459331
ILMN_1668111 7.346036531
ILMN_1735045 7.394739831
ILMN_1680754 7.515901313
ILMN_1659452 7.380332915
ILMN_1767388 7.580512272
ILMN_1755321 7.725401326

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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