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Sample GSM1539104 Query DataSets for GSM1539104
Status Public on Aug 05, 2015
Title 4856050008_G
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 63
gender: Male
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description KPOM0009
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.589299755
ILMN_2383229 7.558668834
ILMN_1806310 7.479989054
ILMN_1779670 7.503842693
ILMN_2321282 7.525634641
ILMN_1671474 7.419353356
ILMN_1772582 7.436328593
ILMN_1653355 7.68861227
ILMN_1717783 7.41605827
ILMN_1705025 7.460241173
ILMN_2359168 7.311408419
ILMN_1731507 7.435602821
ILMN_1787689 7.510122531
ILMN_1745607 7.535535031
ILMN_1668111 7.410736205
ILMN_1735045 7.446732498
ILMN_1680754 7.444948011
ILMN_1659452 7.553943639
ILMN_1767388 7.334642862
ILMN_1755321 7.706081473

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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