NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1539096 Query DataSets for GSM1539096
Status Public on Aug 05, 2015
Title 4856076017_C
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Other Caucasian
age: 72
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description THSM0005
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.547404014
ILMN_2383229 7.548550282
ILMN_1806310 7.472544345
ILMN_1779670 7.476130555
ILMN_2321282 7.539262169
ILMN_1671474 7.432270991
ILMN_1772582 7.533839692
ILMN_1653355 7.661944238
ILMN_1717783 7.464699596
ILMN_1705025 7.390938652
ILMN_2359168 7.413738929
ILMN_1731507 7.531346734
ILMN_1787689 7.629194269
ILMN_1745607 7.414613147
ILMN_1668111 7.421345159
ILMN_1735045 7.377910252
ILMN_1680754 7.566681604
ILMN_1659452 7.562256685
ILMN_1767388 7.533886937
ILMN_1755321 7.654045507

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap