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Sample GSM1539082 Query DataSets for GSM1539082
Status Public on Aug 05, 2015
Title 4856076009_D
Sample type RNA
 
Source name Blood
Organism Homo sapiens
Characteristics status: MCI
ethnicity: Western European
age: 67
gender: Female
included in case -control study: yes
tissue: blood
Extracted molecule total RNA
Extraction protocol RNA was extracted using PAXgene™ Blood RNA Kit (Qiagen), according to the manufacturer’s instructions
Label biotin
Label protocol TotalPrep™ RNA Amplification Kit (Ambion) using manufacturere's protocol
 
Hybridization protocol cDNA was synthesized from 200ng total RNA using TotalPrep™ RNA Amplification Kit (Ambion) which was followed by amplification and biotinylation of cRNA and hybridization.
Scan protocol Illumina Beadarray Scanner
Description LDZM0007
Data processing Using LUMI package in R
 
Submission date Nov 06, 2014
Last update date May 30, 2024
Contact name James Timmons
E-mail(s) [email protected], [email protected]
Organization name Augur Precision Medicine LTD
Street address Bridge of Allan
City Stirling
ZIP/Postal code FK9 4AX
Country United Kingdom
 
Platform ID GPL6947
Series (2)
GSE63060 Alzheimer, MCI and control samples from AddneuroMed Cohort (batch 1)
GSE63063 Alzheimer, Mild Cognitive impairment and control samples from AddneuroMed Cohort

Data table header descriptions
ID_REF
VALUE The raw intensities were variance-stabilization transformed and then quantile normalized

Data table
ID_REF VALUE
ILMN_2055271 7.538045926
ILMN_2383229 7.406979906
ILMN_1806310 7.478494194
ILMN_1779670 7.542144462
ILMN_2321282 7.602952951
ILMN_1671474 7.350322407
ILMN_1772582 7.417368076
ILMN_1653355 7.610028364
ILMN_1717783 7.389195147
ILMN_1705025 7.38603874
ILMN_2359168 7.464922931
ILMN_1731507 7.36889767
ILMN_1787689 7.618920778
ILMN_1745607 7.458673497
ILMN_1668111 7.520830249
ILMN_1735045 7.314818113
ILMN_1680754 7.530971579
ILMN_1659452 7.482406525
ILMN_1767388 7.408883379
ILMN_1755321 7.756228107

Total number of rows: 38323

Table truncated, full table size 931 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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