GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM1522939

Query DataSets for GSM1522939

Status

Public on Oct 20, 2014

Title

Human prostate tumor cp84

Sample type

genomic

Source name

Human prostate tumor

Organism

Homo sapiens

Characteristics

tissue: prostate cancer

Treatment protocol

N/A

Growth protocol

N/A

Extracted molecule

genomic DNA

Extraction protocol

AllPrep DNA/RNA Micro kit, Qiagen Inc.

Label

biotin

Label protocol

Performed at the Dana-Farber Cancer Institute Microarray Core and the protocols can be found at http://macf-web.dfci.harvard.edu/index.php?option=com_content&task=category§ionid=5&id=20&Itemid=87

Hybridization protocol

Performed at the Dana-Farber Cancer Institute Microarray Core and the protocols can be found at http://macf-web.dfci.harvard.edu/index.php?option=com_content&task=category§ionid=5&id=20&Itemid=88

Scan protocol

Performed at the Dana-Farber Cancer Institute Microarray Core and the protocols can be found at http://macf-web.dfci.harvard.edu/index.php?option=com_content&task=category§ionid=5&id=20&Itemid=89

Description

60S_PCa60

Data processing

Dchip was used to generate the .txt files containing SNP genotype calls. GISTIC was applied to identify significantly altered regions.

Submission date

Oct 09, 2014

Last update date

Oct 20, 2014

Contact name

Carmen Priolo

E-mail(s)

[email protected]

Organization name

Brigham and Women's Hospital

Street address

1 Blackfan Circle

City

Boston

State/province

ZIP/Postal code

02115

Country

USA

Platform ID

GPL3720

Series (1)

GSE62218

Affymetrix SNP array data for human prostate tumor samples

Supplementary file	Size	Download	File type/resource
GSM1522939_60S_PCa60.CEL.gz	30.4 Mb	(ftp)(http)	CEL
GSM1522939_60S_PCa60.TXT.gz	2.0 Mb	(ftp)(http)	TXT
Processed data provided as supplementary file
Processed data are available on Series record