|
Status |
Public on Mar 01, 2015 |
Title |
FVBN/APCmin 1 |
Sample type |
RNA |
|
|
Source name |
mouse ileum tumor 1
|
Organism |
Mus musculus |
Characteristics |
strain: FVB/N age: 3-4 months old tissue: ileum tumor genotype/variation: FVBN/APCmin
|
Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted using the Qiazol reagent, following manufacturer's instructions. Quality control was performed with Biorad Experion.
|
Label |
biotin
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Description |
replicate 1
|
Data processing |
The data were normalised using quantile normalization (background was not subtracted) with Illumina Genome Studio Software; items with detection p values >0.001 or AVG Signal <200 were excluded. Data were analyzed with Genome Studio Software (Differential Expression Analysis with Mann-Whitney error model plus False Discovery Rate, FDR).
|
|
|
Submission date |
Sep 22, 2014 |
Last update date |
Mar 01, 2015 |
Contact name |
Elena Bellafante |
E-mail(s) |
[email protected]
|
Organization name |
KCL
|
Department |
Women's Health
|
Lab |
Fetal and Maternal Disease
|
Street address |
Guy's Campus
|
City |
London |
ZIP/Postal code |
SE11UL |
Country |
United Kingdom |
|
|
Platform ID |
GPL6885 |
Series (2) |
GSE61642 |
Genome-wide analysis expression of ileum tumor samples from FVBN/APCmin and iPGC-1β/APCmin |
GSE61643 |
PGC-1β Promotes Enterocyte Lifespan and Tumorigenesis in the Intestine |
|