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Sample GSM150287 Query DataSets for GSM150287
Status Public on Dec 15, 2006
Title earlybird mutant hippocampus hem1A
Sample type RNA
 
Source name hippocampus
Organism Mus musculus
Characteristics earlybird mutant hippocampus
Extracted molecule total RNA
Extraction protocol Approximately 50 mg of tissue was homogenized in 1 ml TriZol reagent and total RNA was extracted according to manufacture's protocol. Total RNA was cleaned up using an RNeasy kit (Qiagen).
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description hippocampus from earlybird mutant mouse
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 14, 2006
Last update date Dec 14, 2006
Contact name Maja Bucan
E-mail(s) [email protected]
Organization name UPENN
Street address 415 Curie Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL339
Series (1)
GSE6527 Earlybird mutation and knockout of Rab3a on gene expression in the cortex and hippocampus

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 103.1 P 0.011384
AFFX-BioB-M_at 129.5 P 0.000258
AFFX-BioB-3_at 47 P 0.015183
AFFX-BioC-5_at 239.6 P 0.000662
AFFX-BioC-3_at 161.2 P 0.000225
AFFX-BioDn-5_at 211.9 P 0.000095
AFFX-BioDn-3_at 1097.3 P 0.000225
AFFX-CreX-5_at 2067.2 P 0.000044
AFFX-CreX-3_at 3169.8 P 0.000044
AFFX-DapX-5_at 12.6 A 0.239063
AFFX-DapX-M_at 16.1 A 0.327079
AFFX-DapX-3_at 4.1 A 0.941556
AFFX-LysX-5_at 0.6 A 0.966323
AFFX-LysX-M_at 2.5 A 0.860518
AFFX-LysX-3_at 9.7 A 0.216524
AFFX-PheX-5_at 3 A 0.724854
AFFX-PheX-M_at 2.1 A 0.760937
AFFX-PheX-3_at 5.6 A 0.814869
AFFX-ThrX-5_at 3.5 A 0.737173
AFFX-ThrX-M_at 8.5 A 0.559354

Total number of rows: 22690

Table truncated, full table size 610 Kbytes.




Supplementary file Size Download File type/resource
GSM150287.CEL.gz 3.3 Mb (ftp)(http) CEL

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