NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM150272 Query DataSets for GSM150272
Status Public on Dec 15, 2006
Title rab3a+/+ cortex crw1A
Sample type RNA
 
Source name cortex
Organism Mus musculus
Characteristics rab3a+/+ cortex
Extracted molecule total RNA
Extraction protocol Approximately 50 mg of tissue was homogenized in 1 ml TriZol reagent and total RNA was extracted according to manufacture's protocol. Total RNA was cleaned up using an RNeasy kit (Qiagen).
Label biotin
Label protocol Approximately 5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description cortex from rab3a+/+ mouse
Data processing Affymetrix Microarray Suite version 5.0
 
Submission date Dec 14, 2006
Last update date Dec 14, 2006
Contact name Maja Bucan
E-mail(s) [email protected]
Organization name UPENN
Street address 415 Curie Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platform ID GPL339
Series (1)
GSE6527 Earlybird mutation and knockout of Rab3a on gene expression in the cortex and hippocampus

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 117.2 P 0.005565
AFFX-BioB-M_at 153 P 0.000195
AFFX-BioB-3_at 43.7 P 0.004998
AFFX-BioC-5_at 192.2 P 0.000258
AFFX-BioC-3_at 131.3 P 0.000147
AFFX-BioDn-5_at 151.3 P 0.000052
AFFX-BioDn-3_at 1057.9 P 0.000147
AFFX-CreX-5_at 1716.6 P 0.000044
AFFX-CreX-3_at 2716 P 0.000044
AFFX-DapX-5_at 1.3 A 0.617401
AFFX-DapX-M_at 2.5 A 0.631562
AFFX-DapX-3_at 1.6 A 0.987453
AFFX-LysX-5_at 0.7 A 0.9273
AFFX-LysX-M_at 3.3 A 0.712257
AFFX-LysX-3_at 5.8 A 0.300606
AFFX-PheX-5_at 1.4 A 0.953518
AFFX-PheX-M_at 2.6 A 0.749204
AFFX-PheX-3_at 5.7 A 0.58862
AFFX-ThrX-5_at 2.3 A 0.897835
AFFX-ThrX-M_at 1.9 A 0.804734

Total number of rows: 22690

Table truncated, full table size 610 Kbytes.




Supplementary file Size Download File type/resource
GSM150272.CEL.gz 3.4 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap