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Status
Public on Oct 30, 2007
Title
Acromegaly 1, control
Sample type
RNA
Source name
blood
Organism
Homo sapiens Characteristics
blood
Extracted molecule
total RNA
Extraction protocol
PAXgene Blood RNA extraction
Label
biotin
Label protocol
standard Affymetrix procedures from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol
standard Affymetrix procedures
Scan protocol
standard Affymetrix procedures
Description
Gene expression data from human peripheral blood
Data processing
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
Submission date
Nov 22, 2006
Last update date
Aug 28, 2018
Contact name
Antti Kokko
Organization name
University of Helsinki
Department
Dept of Medical Genetics
Lab
Tumorigenesis group
Street address
POBOX 63 (Haartmaninkatu 8)
City
Helsinki
ZIP/Postal code
00014 University of Helsinki
Country
Finland
Platform ID
GPL570 Series (1)
GSE6351 Expression data from peripheral blood from healthy and predisposed individuals
Relations Reanalyzed by
GSE64985 Reanalyzed by
GSE119087
Data table header descriptions ID_REF VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
218.8
P
0.000446
AFFX-BioB-M_at
776.8
P
0.00006
AFFX-BioB-3_at
372.4
P
0.000662
AFFX-BioC-5_at
1039
P
0.000044
AFFX-BioC-3_at
1551.8
P
0.000052
AFFX-BioDn-5_at
1151.4
P
0.00011
AFFX-BioDn-3_at
4698.9
P
0.000044
AFFX-CreX-5_at
12711.9
P
0.000044
AFFX-CreX-3_at
19095.6
P
0.000044
AFFX-DapX-5_at
684.5
P
0.00006
AFFX-DapX-M_at
1460.3
P
0.000581
AFFX-DapX-3_at
1675
P
0.000052
AFFX-LysX-5_at
49.6
P
0.000662
AFFX-LysX-M_at
150.1
P
0.004484
AFFX-LysX-3_at
393
P
0.00011
AFFX-PheX-5_at
112.6
P
0.00034
AFFX-PheX-M_at
124.8
P
0.001102
AFFX-PheX-3_at
240.5
P
0.000581
AFFX-ThrX-5_at
180.7
P
0.000446
AFFX-ThrX-M_at
221.6
P
0.000509
54675 1411 Kbytes .Supplementary file Size Download File type/resource GSM146837.CEL.gz
4.5 Mb
(ftp) (http) CEL
GSM146837.EXP.gz
505 b
(ftp) (http) EXP
