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Sample GSM139475 Query DataSets for GSM139475
Status Public on Apr 09, 2007
Title Ovarian_Tumor_Serous_UM-OS-11
Sample type RNA
 
Source name Ovarian_Tumor
Organism Homo sapiens
Characteristics Tumor_Type: Serous
stage: 3c
grade: 3
B-canenin_nuclear_accumulation: N/A
CTNNB1_mutation: N/A
APC_mutation: N/A
PTEN_mutation: N/A
PTEN_immunohistochemistry: N/A
KRAS_mutation: N/A
PIK3CA_mutation: N/A
TP53_mutation: N/A
P53_immunohistochemistry: N/A
CEL_file_name: UM-OS-11.CEL
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol 3-5 µg of total RNA was processed to produce biotinylated cRNA targets.
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description ovarian tumor: serous
Data processing Ann Arbor quantile-normalized trimmed-mean method
 
Submission date Oct 10, 2006
Last update date Apr 09, 2007
Contact name Rork Kuick
E-mail(s) [email protected]
Phone 734-936-9241
Organization name University of Michigan
Street address University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City Ann Arbor
State/province MI
ZIP/Postal code 48109-2029
Country USA
 
Platform ID GPL96
Series (1)
GSE6008 Human ovarian tumors and normal ovaries

Data table header descriptions
ID_REF
VALUE quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 10 logarithms

Data table
ID_REF VALUE
1007_s_at 4.10130018
1053_at 2.756636108
117_at 2.575187845
121_at 3.950608225
1255_g_at 2.480006943
1294_at 3.264345507
1316_at 2.651278014
1320_at 2.51851394
1405_i_at 2.372912003
1431_at 2.555094449
1438_at 2.86332286
1487_at 3.157758886
1494_f_at 2.87909588
1598_g_at 3.721480855
160020_at 3.640183192
1729_at 2.686636269
177_at 2.823474229
1773_at 2.960470778
179_at 3.40534636
1861_at 2.866287339

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM139475.CEL.gz 3.4 Mb (ftp)(http) CEL

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